Our HDF5 writer class. More...

#include <hdf5writer.hpp>

Public Member Functions
	hdf5writer (std::string name)
	Construction of hdf5 writer class with a name. More...

template<class MultiIndex >
void	set_coeff_dim (waveblocks::wavepackets::ScalarHaWp< D, MultiIndex > packet)
	runtime function to evaluate number of coefficients More...

template<class MultiIndex >
void	prestructuring (waveblocks::wavepackets::ScalarHaWp< D, MultiIndex > packet, double dt)
	prestructure after knowing bool values and packet More...

void	set_write_packet (bool flag)
	sets bool value for writing the packet(matrices and coefficients) More...

void	set_write_energies (bool flag)
	sets bool value for writing the energies More...

void	set_write_norm (bool flag)
	sets bool value for writing norms More...

void	set_timestep_packet (int timestep)
	set timestep for writing packet More...

void	set_timestep_norm (int timestep)
	set timestep for writing norms More...

void	set_timestep_energies (int timestep)
	set timestep for writing energies More...

void	set_timestep_epot (int timestep)
	set timestep for writing epot More...

void	set_timestep_ekin (int timestep)
	set timestep for writing ekin More...

void	set_chunk_dim (void)
	Set up chunk dimension for the written variables. More...

void	set_elem_space (void)
	Set up elem space for HDF interface. More...

void	set_group_structure (double dt)
	set up group structure in file More...

void	select_elem_hyperslabs (void)
	From HDF interface select element hyperslabs. More...

void	set_file_dataspace (void)
	set dataspace used in file More...

void	allocate_datasets (void)
	allocate space for datasets More...

void	setup_extension_norm (void)
	setup extension for norms More...

void	setup_extension_epot (void)
	setup extension for epot More...

void	setup_extension_ekin (void)
	setup extension for ekin More...

void	setup_extension_packet (void)
	setup extension for packet More...

void	extend_dataset_packet (void)
	extend dataset for next timestep for packet More...

void	extend_dataset_norm (void)
	extend dataset for next timestep for norms More...

void	extend_dataset_epot (void)
	extend dataset for next timestep for epot More...

void	extend_dataset_ekin (void)
	extend dataset for next timestep for ekin More...

void	update_filespace_ekin (void)
	update ekin filespace More...

void	update_filespace_epot (void)
	update epot filespace More...

void	update_filespace_norm (void)
	update norms filespace More...

void	update_filespace_packet (void)
	update packet filespace More...

void	transform (std::vector< ctype > &newdata, Eigen::Matrix< complex_t, D, D > mat)
	transform Eigen::Matrix<complex_t,D,D> into std::vector<ctype> More...

void	transform (std::vector< ctype > &newdata, Eigen::Matrix< real_t, D, 1 > mat)
	transform Eigen::Matrix<real_t,D,1> into std::vector<ctype> More...

void	transform (std::vector< ctype > &newdata, complex_t arg)
	transform a std::complex variable into std::vector<ctype> More...

void	transform (std::vector< ctype > &newdata, Eigen::Matrix< complex_t, Eigen::Dynamic, 1 > cmat)
	transform an Eigen::Matrix<complex_t,Eigen::Dynamic,1> to std::vector<ctype> More...

void	transform (std::vector< ctype > &newdata, real_t arg)
	transform real_t to std::vector<ctype> More...

template<class MultiIndex >
void	store_packet (const waveblocks::wavepackets::ScalarHaWp< D, MultiIndex > &packetto)
	store ScalarHaWp<D,Multiindex> packet More...

void	store_energies (double epot_, double ekin_)
	store energies in chosen timestep More...

template<class MultiIndex >
void	store_norm (const waveblocks::wavepackets::ScalarHaWp< D, MultiIndex > &packet)
	store norms in chosen timestep More...

void	select_file_writespace_packet (void)
	select file writespace for packet More...

void	advance_packet (void)
	advance writing position for packet and extends set More...

void	select_file_writespace_ekin (void)
	select file writespace for ekin More...

void	advance_ekin (void)
	advance writing position for ekin and extends set More...

void	select_file_writespace_epot (void)
	select file writespace for epot More...

void	advance_epot (void)
	advance writing position for epot and extends set More...

void	select_file_writespace_norm (void)
	select file writespace for norms More...

void	advance_norm (void)
	advance writing position for norms and extends set More...

void	cleanup_packet (void)
	reverse last dataset extension for packet More...

void	cleanup_ekin (void)
	reverse last dataset extension for ekin More...

void	cleanup_epot (void)
	reverse last dataset extension for epot More...

void	cleanup_norm (void)
	reverse last dataset extension for norms More...

void	poststructuring (void)
	last resize for exact length More...

Private Attributes
H5std_string	filename_
	placeholder for filename More...

CompType	mytype_
	declaration of H5:CompType member used for HDF interface to write ctype* More...

H5File	file_
	H5File placeholder. More...

std::map< std::string, bool >	wrlist ={{"packet",1},{"energy",0},{"norm",0}}
	maps string to bool for constructing und writing defined variables More...

Attribute	apacket
	attribute to save bool packet in datablock_0 More...

Attribute	aenergy
	attribute to save bool energy in datablock_0 More...

Attribute	anorm
	attribute to save bool norm in datablock_0 More...

Attribute	adt
	attribute to save dt in datablock_0 More...

Attribute	aversion
	attribute to save file version More...

double	dref =0.
	fillvalue for energys for allocation More...

int	version =2
	version number More...

int	iref =0
	fillvalue for timegrids for allocation More...

H5std_string	packet_group_string ="/Pi"
	String for H5Group to save packet to. Default:Pi. More...

H5std_string	datablock_string ="/datablock_0"
	String for H5Group for datablock.default. datablock_0. More...

H5std_string	coefficient_group_string ="/coefficients"
	String for H5Group of coefficients. Default:coefficients. More...

H5std_string	wavepacket_group_string ="/wavepacket"
	String for H5Group for packet and coefficients. Default:wavepacket. More...

H5std_string	energies_group ="/energies"
	name for group energies Default:energies More...

H5std_string	norms_group ="/norm"
	name for group norms Default:norm More...

H5std_string	observables_group ="/observables"
	name for group observables Default:observables More...

DSetCreatPropList	plist_qp
	PropList for packet.q() packet.p() More...

DSetCreatPropList	plist_QP
	PropList for packet.Q() packet.P() More...

DSetCreatPropList	plist_S
	PropList for packet.S() More...

DSetCreatPropList	plist_energy
	PropList for energies. More...

DSetCreatPropList	plist_c
	PropList for coefficients. More...

DSetCreatPropList	plist_time
	PropList for timegrids. More...

DSetCreatPropList	plist_norms
	PropList for norms. More...

const int	RANK1 =1
	rank 1 identifier More...

const int	RANK2 =2
	rank 2 identifier More...

const int	RANK3 =3
	rank 3 identifier More...

const hsize_t	maxdims1 [1] ={H5S_UNLIMITED}
	max dim identifier for rank1 for extension More...

const hsize_t	maxdims2 [2] ={H5S_UNLIMITED,H5S_UNLIMITED}
	max dim identifier for rank2 for extension More...

const hsize_t	maxdims3 [3] ={H5S_UNLIMITED,H5S_UNLIMITED,H5S_UNLIMITED}
	max dim identifier for rank3 for extension More...

hsize_t	exqp [3]
	extension for packet.q() packet.p() More...

hsize_t	exQP [3]
	extension for packet.Q() packet.P() More...

hsize_t	exS [3]
	extension for packet.S() and packet.sdQ() More...

hsize_t	exc [2]
	extension for coefficients More...

hsize_t	exekin [2]
	extension for ekin More...

hsize_t	exepot [2]
	extension for epot More...

hsize_t	exnorms [2]
	extension for norms More...

hsize_t	ex_timegrid_norms [1]
	extension for timegrid for norms More...

hsize_t	ex_timegrid_epot [1]
	extension for timegrid for epot More...

hsize_t	ex_timegrid_ekin [1]
	extension for timegrid for ekin More...

hsize_t	ex_timegrid_packet [1]
	extension for timegrid for packet More...

hsize_t	qpelem [3]
	size of q,p element written from program to file needed by HDF interface More...

DataSpace	qpelemspace
	space of q,p element written from program to file needed by HDF interface More...

hsize_t	QPelem [3]
	size of Q,P element written from program to file needed by HDF interface More...

DataSpace	QPelemspace
	space of Q,P element written from program to file needed by HDF interface More...

hsize_t	Selem [3]
	size of S element written from program to file needed by HDF interface More...

DataSpace	Selemspace
	space of S element written from program to file needed by HDF interface More...

hsize_t	energyelem [2]
	size of energy element written from program to file needed by HDF interface More...

DataSpace	energyelemspace
	space of energy element written from program to file needed by HDF interface More...

hsize_t	timeelem [1]
	size of timegrid element written from program to file needed by HDF interface More...

DataSpace	timelemspace
	space of timegrid element written from program to file needed by HDF interface More...

hsize_t	celem [2]
	size of coefficient element written from program to file needed by HDF interface More...

DataSpace	celemspace
	space of coefficient element written from program to file needed by HDF interface More...

hsize_t	normelem [2]
	size of coefficient element written from program to file needed by HDF interface More...

DataSpace	normelemspace
	space of norm element written from program to file needed by HDF interface More...

int	index_packet =1
	index used for storing packet More...

int	index_norm =1
	index used for storing norm More...

int	index_ekin =1
	index used for storing ekin More...

int	index_epot =1
	index used for storing epot More...

int	timestepsize_norms =1
	timestepsize for norm timegrid More...

int	timestepsize_ekin =1
	timestepsize for ekin timegrid More...

int	timestepsize_epot =1
	timestepsize for epot timegrid More...

int	timestepsize_packet =1
	timestepsize for packet timegrid More...

int	tindex_ekin =0
	timeindex for modulo writing ekin More...

int	tindex_epot =0
	timeindex for modulo writing epot More...

int	tindex_norm =0
	timeindex for modulo writing norms More...

int	tindex_packet =0
	timeindex for modulo writing packet More...

int	csize
	runtime size coefficients More...

std::shared_ptr< Group >	gblock
	group for datablock More...

std::shared_ptr< Group >	gpacket
	group for packet More...

std::shared_ptr< Group >	gPi
	group for matrices in packet More...

std::shared_ptr< Group >	gcoefficient
	group for coefficients in packet More...

std::shared_ptr< Group >	genergy
	group for energies More...

std::shared_ptr< Group >	gnorms
	group for norms More...

std::shared_ptr< Group >	gobservables
	group for observables More...

DataSpace	qspace
	space for packet.q() in file More...

std::shared_ptr< DataSet >	qs
	dataset for packet.q() in file More...

DataSpace	pspace
	space for packet.p() in file More...

std::shared_ptr< DataSet >	ps
	dataset for packet.p() in file More...

DataSpace	Qspace
	space for packet.Q() in file More...

std::shared_ptr< DataSet >	Qs
	dataset for packet.Q() in file More...

DataSpace	Pspace
	space for packet.P() in file More...

std::shared_ptr< DataSet >	Ps
	dataset for packet.P() in file More...

DataSpace	Sspace
	space for packet.S() in file More...

std::shared_ptr< DataSet >	Ss
	dataset for packet.S() in file More...

DataSpace	adQspace
	space for packet.sdQ() in file More...

std::shared_ptr< DataSet >	adQs
	dataset for packet.sdQ() in file More...

DataSpace	cspace
	space for coefficients in file More...

std::shared_ptr< DataSet >	coeffs
	dataset for coefficients in file More...

DataSpace	timespace_packet
	space for timegrid for packet in file More...

std::shared_ptr< DataSet >	times_packet
	dataset for timegrid for packet in file More...

DataSpace	timespace_ekin
	space for timegrid ekin More...

std::shared_ptr< DataSet >	times_ekin
	dataset for timegrid for ekin in file More...

DataSpace	timespace_epot
	space for timegrid epot More...

std::shared_ptr< DataSet >	times_epot
	dataset for timegrid for epot in file More...

DataSpace	timespace_norms
	space for timegrid in file More...

std::shared_ptr< DataSet >	times_norms
	dataset for timegrid in file More...

DataSpace	energyspace_ekin
	space for ekin in file More...

std::shared_ptr< DataSet >	energys_ekin
	dataset for ekin in file More...

DataSpace	energyspace_epot
	space for epot in file More...

std::shared_ptr< DataSet >	energys_epot
	dataset for epot in file More...

DataSpace	normspace
	space for norms More...

std::shared_ptr< DataSet >	normss
	dataset for norms in file More...

Friends
struct	ctype

Detailed Description

template<int D>
class waveblocks::io::hdf5writer< D >

Our HDF5 writer class.

This class is templated on the Dimension D which is also used to also define the dimensionality of the HaWpBasisVector. Also after ctor is called there has to follow a prestructuring<MultiIndex>() for correct construction

Constructor & Destructor Documentation

template<int D>

waveblocks::io::hdf5writer< D >::hdf5writer ( std::string name )

inline

Construction of hdf5 writer class with a name.

Parameters

name	for construction

Construction of hdf5 writer from std::string

Parameters

name	where also implicitly the definition of our H5:CompType is hidden. Also the H5::File gets constructed by the
name	where it is open with H5F_ACC_TRUNC value

Member Function Documentation

template<int D>

void waveblocks::io::hdf5writer< D >::advance_ekin ( void )

inline

advance writing position for ekin and extends set

Wrapper for index_ekin++, set_up_extension_ekin(), extend_dataset_ekin() and update_filespace_ekin()

template<int D>

void waveblocks::io::hdf5writer< D >::advance_epot ( void )

inline

advance writing position for epot and extends set

Wrapper for index_epot++, set_up_extension_epot(), extend_dataset_epot() and update_filespace_epot()

template<int D>

void waveblocks::io::hdf5writer< D >::advance_norm ( void )

inline

advance writing position for norms and extends set

Wrapper for index_norm++, set_up_extension_norms(), extend_dataset_norms() and update_filespace_norms()

template<int D>

void waveblocks::io::hdf5writer< D >::advance_packet ( void )

inline

advance writing position for packet and extends set

Wrapper for index_packet++, set_up_extension_packet(), extend_dataset_packet() and update_filespace_packet()

template<int D>

void waveblocks::io::hdf5writer< D >::allocate_datasets ( void )

inline

allocate space for datasets

Allocate all datasets in file depending on the set bool values. This is called once and uses shared_ptr for easy use no garbage collection needed.

template<int D>

void waveblocks::io::hdf5writer< D >::cleanup_ekin ( void )

inline

reverse last dataset extension for ekin

Last writing process extended set although it is the last one. This just reverses the last extension so the dataset is exactly as big as the number of timesteps written.

template<int D>

void waveblocks::io::hdf5writer< D >::cleanup_epot ( void )

inline

reverse last dataset extension for epot

Last writing process extended set although it is the last one. This just reverses the last extension so the dataset is exactly as big as the number of timesteps written.

template<int D>

void waveblocks::io::hdf5writer< D >::cleanup_norm ( void )

inline

reverse last dataset extension for norms

Last writing process extended set although it is the last one. This just reverses the last extension so the dataset is exactly as big as the number of timesteps written.

template<int D>

void waveblocks::io::hdf5writer< D >::cleanup_packet ( void )

inline

reverse last dataset extension for packet

Last writing process extended set although it is the last one. This just reverses the last extension so the dataset is exactly as big as the number of timesteps written.

template<int D>

void waveblocks::io::hdf5writer< D >::extend_dataset_ekin ( void )

inline

extend dataset for next timestep for ekin

Called after a subset was written and extension is set.

template<int D>

void waveblocks::io::hdf5writer< D >::extend_dataset_epot ( void )

inline

extend dataset for next timestep for epot

Called after a subset was written and extension is set.

template<int D>

void waveblocks::io::hdf5writer< D >::extend_dataset_norm ( void )

inline

extend dataset for next timestep for norms

Called after a subset was written and extension is set.

template<int D>

void waveblocks::io::hdf5writer< D >::extend_dataset_packet ( void )

inline

extend dataset for next timestep for packet

Called after a subset was written and extension is set.

template<int D>

void waveblocks::io::hdf5writer< D >::poststructuring ( void )

inline

last resize for exact length

Wrapper for all cleanup calls

template<int D>

template<class MultiIndex >

void waveblocks::io::hdf5writer< D >::prestructuring	(	waveblocks::wavepackets::ScalarHaWp< D, MultiIndex >	packet,
		double	dt
	)

inline

prestructure after knowing bool values and packet

Parameters

packet	used for evaluation number of coefficients
dt	to save timestepsize as attribute

template<int D>

void waveblocks::io::hdf5writer< D >::select_elem_hyperslabs ( void )

inline

From HDF interface select element hyperslabs.

These elements are selected such that in every timestep it can be written to file. This is onlye called once because the elemantary spaces should never change.

template<int D>

void waveblocks::io::hdf5writer< D >::select_file_writespace_ekin ( void )

inline

select file writespace for ekin

Called always before ekin is written to evaluate space to write.

template<int D>

void waveblocks::io::hdf5writer< D >::select_file_writespace_epot ( void )

inline

select file writespace for epot

Called always before epot is written to evaluate space to write.

template<int D>

void waveblocks::io::hdf5writer< D >::select_file_writespace_norm ( void )

inline

select file writespace for norms

Called always before norms are written to evaluate space to write.

template<int D>

void waveblocks::io::hdf5writer< D >::select_file_writespace_packet ( void )

inline

select file writespace for packet

Called always before packet is written to evaluate space to write.

template<int D>

void waveblocks::io::hdf5writer< D >::set_chunk_dim ( void )

inline

Set up chunk dimension for the written variables.

The HDF Interface needs that the PropList exits with chunked dimension otherwise it is not possible to extend this particular DataSet

template<int D>

template<class MultiIndex >

void waveblocks::io::hdf5writer< D >::set_coeff_dim ( waveblocks::wavepackets::ScalarHaWp< D, MultiIndex > packet )

inline

runtime function to evaluate number of coefficients

Parameters

packet to deduce number of coefficients Used in prestructuring<MultiIndex>

template<int D>

void waveblocks::io::hdf5writer< D >::set_elem_space ( void )

inline

Set up elem space for HDF interface.

The HDF Interface needs a DataSpace for elements written from data to the file. A dataspace is constructet from a rank identifier and corresponding hsize_t dimension array which has to be of size rank

template<int D>

void waveblocks::io::hdf5writer< D >::set_file_dataspace ( void )

inline

set dataspace used in file

Initial construction of the spaces for all sets. Also called only once because later with extensions it has to be resett in every extension call with new sizes.

template<int D>

void waveblocks::io::hdf5writer< D >::set_group_structure ( double dt )

inline

set up group structure in file

Parameters

dt	for writing global timestep

This is needed for the correct subtructure of all datasets. It also sets Attributes in datablock to save which datasets were written and its correspondig global timestep.

template<int D>

void waveblocks::io::hdf5writer< D >::set_timestep_ekin ( int timestep )

inline

set timestep for writing ekin

Parameters

timestep

template<int D>

void waveblocks::io::hdf5writer< D >::set_timestep_energies ( int timestep )

inline

set timestep for writing energies

Parameters

timestep

template<int D>

void waveblocks::io::hdf5writer< D >::set_timestep_epot ( int timestep )

inline

set timestep for writing epot

Parameters

timestep

template<int D>

void waveblocks::io::hdf5writer< D >::set_timestep_norm ( int timestep )

inline

set timestep for writing norms

Parameters

timestep

template<int D>

void waveblocks::io::hdf5writer< D >::set_timestep_packet ( int timestep )

inline

set timestep for writing packet

Parameters

timestep

template<int D>

void waveblocks::io::hdf5writer< D >::set_write_energies ( bool flag )

inline

sets bool value for writing the energies

Parameters

flag

template<int D>

void waveblocks::io::hdf5writer< D >::set_write_norm ( bool flag )

inline

sets bool value for writing norms

Parameters

flag

template<int D>

void waveblocks::io::hdf5writer< D >::set_write_packet ( bool flag )

inline

sets bool value for writing the packet(matrices and coefficients)

Parameters

flag

template<int D>

void waveblocks::io::hdf5writer< D >::setup_extension_ekin ( void )

inline

setup extension for ekin

Called after a subset was written.

template<int D>

void waveblocks::io::hdf5writer< D >::setup_extension_epot ( void )

inline

setup extension for epot

Called after a subset was written.

template<int D>

void waveblocks::io::hdf5writer< D >::setup_extension_norm ( void )

inline

setup extension for norms

Called after a subset was written.

template<int D>

void waveblocks::io::hdf5writer< D >::setup_extension_packet ( void )

inline

setup extension for packet

Called after a subset was written.

template<int D>

void waveblocks::io::hdf5writer< D >::store_energies	(	double	epot_,
		double	ekin_
	)

inline

store energies in chosen timestep

Parameters

epot_
ekin_

template<int D>

template<class MultiIndex >

void waveblocks::io::hdf5writer< D >::store_norm ( const waveblocks::wavepackets::ScalarHaWp< D, MultiIndex > & packet )

inline

store norms in chosen timestep

Extendable for norms user is interested in.

template<int D>

template<class MultiIndex >

void waveblocks::io::hdf5writer< D >::store_packet ( const waveblocks::wavepackets::ScalarHaWp< D, MultiIndex > & packetto )

inline

store ScalarHaWp<D,Multiindex> packet

Uses the the transformer PacketToCoefficients<wavepackets::ScalarHaWp<D,MultiIndex>>to(packet) and the packet.parameters() function to call their corresponding transform function which then can be written to dataset.

template<int D>

void waveblocks::io::hdf5writer< D >::transform	(	std::vector< ctype > &	newdata,
		Eigen::Matrix< complex_t, D, D >	mat
	)

inline

transform Eigen::Matrix<complex_t,D,D> into std::vector<ctype>

Parameters

newdata
mat	Transforms an Eigen::Matrix<complex_t,D,D> into a writeable ctype*

template<int D>

void waveblocks::io::hdf5writer< D >::transform	(	std::vector< ctype > &	newdata,
		Eigen::Matrix< real_t, D, 1 >	mat
	)

inline

transform Eigen::Matrix<real_t,D,1> into std::vector<ctype>

Parameters

newdata
mat	Transforms an Eigen::Matrix<real_t,D,1> into a writable std::vector<ctype>

template<int D>

void waveblocks::io::hdf5writer< D >::transform	(	std::vector< ctype > &	newdata,
		complex_t	arg
	)

inline

transform a std::complex variable into std::vector<ctype>

Parameters

newdata
arg	Transform a complex_t type into writable std::vector<ctype>

template<int D>

void waveblocks::io::hdf5writer< D >::transform	(	std::vector< ctype > &	newdata,
		Eigen::Matrix< complex_t, Eigen::Dynamic, 1 >	cmat
	)

inline

transform an Eigen::Matrix<complex_t,Eigen::Dynamic,1> to std::vector<ctype>

Parameters

newdata
cmat	Transform a Eigen::Matrix<complex_t,Eigen::Dynamic,1> into writable std::vector<ctype>

template<int D>

void waveblocks::io::hdf5writer< D >::transform	(	std::vector< ctype > &	newdata,
		real_t	arg
	)

inline

transform real_t to std::vector<ctype>

Parameters

newdata
arg	Transforms a real_t into writeable std::vector<ctype>

template<int D>

void waveblocks::io::hdf5writer< D >::update_filespace_ekin ( void )

inline

update ekin filespace

Needs to be done after extending this dataset

template<int D>

void waveblocks::io::hdf5writer< D >::update_filespace_epot ( void )

inline

update epot filespace

Needs to be done after extending this dataset

template<int D>

void waveblocks::io::hdf5writer< D >::update_filespace_norm ( void )

inline

update norms filespace

Needs to be done after extending this dataset

template<int D>

void waveblocks::io::hdf5writer< D >::update_filespace_packet ( void )

inline

update packet filespace

Needs to be done after extending this dataset

Friends And Related Function Documentation

template<int D>

friend struct ctype

friend

Member Data Documentation

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::adQs

private

dataset for packet.sdQ() in file

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::adQspace

private

space for packet.sdQ() in file

template<int D>

Attribute waveblocks::io::hdf5writer< D >::adt

private

attribute to save dt in datablock_0

template<int D>

Attribute waveblocks::io::hdf5writer< D >::aenergy

private

attribute to save bool energy in datablock_0

template<int D>

Attribute waveblocks::io::hdf5writer< D >::anorm

private

attribute to save bool norm in datablock_0

template<int D>

Attribute waveblocks::io::hdf5writer< D >::apacket

private

attribute to save bool packet in datablock_0

template<int D>

Attribute waveblocks::io::hdf5writer< D >::aversion

private

attribute to save file version

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::celem[2]

private

size of coefficient element written from program to file needed by HDF interface

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::celemspace

private

space of coefficient element written from program to file needed by HDF interface

template<int D>

H5std_string waveblocks::io::hdf5writer< D >::coefficient_group_string ="/coefficients"

private

String for H5Group of coefficients. Default:coefficients.

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::coeffs

private

dataset for coefficients in file

template<int D>

int waveblocks::io::hdf5writer< D >::csize

private

runtime size coefficients

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::cspace

private

space for coefficients in file

template<int D>

H5std_string waveblocks::io::hdf5writer< D >::datablock_string ="/datablock_0"

private

String for H5Group for datablock.default. datablock_0.

template<int D>

double waveblocks::io::hdf5writer< D >::dref =0.

private

fillvalue for energys for allocation

template<int D>

H5std_string waveblocks::io::hdf5writer< D >::energies_group ="/energies"

private

name for group energies Default:energies

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::energyelem[2]

private

size of energy element written from program to file needed by HDF interface

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::energyelemspace

private

space of energy element written from program to file needed by HDF interface

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::energys_ekin

private

dataset for ekin in file

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::energys_epot

private

dataset for epot in file

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::energyspace_ekin

private

space for ekin in file

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::energyspace_epot

private

space for epot in file

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::ex_timegrid_ekin[1]

private

extension for timegrid for ekin

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::ex_timegrid_epot[1]

private

extension for timegrid for epot

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::ex_timegrid_norms[1]

private

extension for timegrid for norms

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::ex_timegrid_packet[1]

private

extension for timegrid for packet

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::exc[2]

private

extension for coefficients

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::exekin[2]

private

extension for ekin

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::exepot[2]

private

extension for epot

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::exnorms[2]

private

extension for norms

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::exqp[3]

private

extension for packet.q() packet.p()

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::exQP[3]

private

extension for packet.Q() packet.P()

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::exS[3]

private

extension for packet.S() and packet.sdQ()

template<int D>

H5File waveblocks::io::hdf5writer< D >::file_

private

H5File placeholder.

template<int D>

H5std_string waveblocks::io::hdf5writer< D >::filename_

private

placeholder for filename

template<int D>

std::shared_ptr<Group> waveblocks::io::hdf5writer< D >::gblock

private

group for datablock

template<int D>

std::shared_ptr<Group> waveblocks::io::hdf5writer< D >::gcoefficient

private

group for coefficients in packet

template<int D>

std::shared_ptr<Group> waveblocks::io::hdf5writer< D >::genergy

private

group for energies

template<int D>

std::shared_ptr<Group> waveblocks::io::hdf5writer< D >::gnorms

private

group for norms

template<int D>

std::shared_ptr<Group> waveblocks::io::hdf5writer< D >::gobservables

private

group for observables

template<int D>

std::shared_ptr<Group> waveblocks::io::hdf5writer< D >::gpacket

private

group for packet

template<int D>

std::shared_ptr<Group> waveblocks::io::hdf5writer< D >::gPi

private

group for matrices in packet

template<int D>

int waveblocks::io::hdf5writer< D >::index_ekin =1

private

index used for storing ekin

template<int D>

int waveblocks::io::hdf5writer< D >::index_epot =1

private

index used for storing epot

template<int D>

int waveblocks::io::hdf5writer< D >::index_norm =1

private

index used for storing norm

template<int D>

int waveblocks::io::hdf5writer< D >::index_packet =1

private

index used for storing packet

template<int D>

int waveblocks::io::hdf5writer< D >::iref =0

private

fillvalue for timegrids for allocation

template<int D>

const hsize_t waveblocks::io::hdf5writer< D >::maxdims1[1] ={H5S_UNLIMITED}

private

max dim identifier for rank1 for extension

template<int D>

const hsize_t waveblocks::io::hdf5writer< D >::maxdims2[2] ={H5S_UNLIMITED,H5S_UNLIMITED}

private

max dim identifier for rank2 for extension

template<int D>

const hsize_t waveblocks::io::hdf5writer< D >::maxdims3[3] ={H5S_UNLIMITED,H5S_UNLIMITED,H5S_UNLIMITED}

private

max dim identifier for rank3 for extension

template<int D>

CompType waveblocks::io::hdf5writer< D >::mytype_

private

declaration of H5:CompType member used for HDF interface to write ctype*

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::normelem[2]

private

size of coefficient element written from program to file needed by HDF interface

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::normelemspace

private

space of norm element written from program to file needed by HDF interface

template<int D>

H5std_string waveblocks::io::hdf5writer< D >::norms_group ="/norm"

private

name for group norms Default:norm

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::normspace

private

space for norms

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::normss

private

dataset for norms in file

template<int D>

H5std_string waveblocks::io::hdf5writer< D >::observables_group ="/observables"

private

name for group observables Default:observables

template<int D>

H5std_string waveblocks::io::hdf5writer< D >::packet_group_string ="/Pi"

private

String for H5Group to save packet to. Default:Pi.

template<int D>

DSetCreatPropList waveblocks::io::hdf5writer< D >::plist_c

private

PropList for coefficients.

template<int D>

DSetCreatPropList waveblocks::io::hdf5writer< D >::plist_energy

private

PropList for energies.

template<int D>

DSetCreatPropList waveblocks::io::hdf5writer< D >::plist_norms

private

PropList for norms.

template<int D>

DSetCreatPropList waveblocks::io::hdf5writer< D >::plist_qp

private

PropList for packet.q() packet.p()

template<int D>

DSetCreatPropList waveblocks::io::hdf5writer< D >::plist_QP

private

PropList for packet.Q() packet.P()

template<int D>

DSetCreatPropList waveblocks::io::hdf5writer< D >::plist_S

private

PropList for packet.S()

template<int D>

DSetCreatPropList waveblocks::io::hdf5writer< D >::plist_time

private

PropList for timegrids.

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::ps

private

dataset for packet.p() in file

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::Ps

private

dataset for packet.P() in file

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::pspace

private

space for packet.p() in file

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::Pspace

private

space for packet.P() in file

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::qpelem[3]

private

size of q,p element written from program to file needed by HDF interface

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::QPelem[3]

private

size of Q,P element written from program to file needed by HDF interface

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::qpelemspace

private

space of q,p element written from program to file needed by HDF interface

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::QPelemspace

private

space of Q,P element written from program to file needed by HDF interface

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::qs

private

dataset for packet.q() in file

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::Qs

private

dataset for packet.Q() in file

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::qspace

private

space for packet.q() in file

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::Qspace

private

space for packet.Q() in file

template<int D>

const int waveblocks::io::hdf5writer< D >::RANK1 =1

private

rank 1 identifier

template<int D>

const int waveblocks::io::hdf5writer< D >::RANK2 =2

private

rank 2 identifier

template<int D>

const int waveblocks::io::hdf5writer< D >::RANK3 =3

private

rank 3 identifier

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::Selem[3]

private

size of S element written from program to file needed by HDF interface

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::Selemspace

private

space of S element written from program to file needed by HDF interface

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::Ss

private

dataset for packet.S() in file

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::Sspace

private

space for packet.S() in file

template<int D>

hsize_t waveblocks::io::hdf5writer< D >::timeelem[1]

private

size of timegrid element written from program to file needed by HDF interface

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::timelemspace

private

space of timegrid element written from program to file needed by HDF interface

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::times_ekin

private

dataset for timegrid for ekin in file

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::times_epot

private

dataset for timegrid for epot in file

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::times_norms

private

dataset for timegrid in file

template<int D>

std::shared_ptr<DataSet> waveblocks::io::hdf5writer< D >::times_packet

private

dataset for timegrid for packet in file

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::timespace_ekin

private

space for timegrid ekin

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::timespace_epot

private

space for timegrid epot

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::timespace_norms

private

space for timegrid in file

template<int D>

DataSpace waveblocks::io::hdf5writer< D >::timespace_packet

private

space for timegrid for packet in file

template<int D>

int waveblocks::io::hdf5writer< D >::timestepsize_ekin =1

private

timestepsize for ekin timegrid

template<int D>

int waveblocks::io::hdf5writer< D >::timestepsize_epot =1

private

timestepsize for epot timegrid

template<int D>

int waveblocks::io::hdf5writer< D >::timestepsize_norms =1

private

timestepsize for norm timegrid

template<int D>

int waveblocks::io::hdf5writer< D >::timestepsize_packet =1

private

timestepsize for packet timegrid

template<int D>

int waveblocks::io::hdf5writer< D >::tindex_ekin =0

private

timeindex for modulo writing ekin

template<int D>

int waveblocks::io::hdf5writer< D >::tindex_epot =0

private

timeindex for modulo writing epot

template<int D>

int waveblocks::io::hdf5writer< D >::tindex_norm =0

private

timeindex for modulo writing norms

template<int D>

int waveblocks::io::hdf5writer< D >::tindex_packet =0

private

timeindex for modulo writing packet

template<int D>

int waveblocks::io::hdf5writer< D >::version =2

private

version number

template<int D>

H5std_string waveblocks::io::hdf5writer< D >::wavepacket_group_string ="/wavepacket"

private

String for H5Group for packet and coefficients. Default:wavepacket.

template<int D>

std::map<std::string,bool> waveblocks::io::hdf5writer< D >::wrlist ={{"packet",1},{"energy",0},{"norm",0}}

private

maps string to bool for constructing und writing defined variables

The documentation for this class was generated from the following file:

/userdata/raoulb/LWB/libwaveblocks/waveblocks/io/hdf5writer.hpp

Public Member Functions

Private Attributes

Friends

Detailed Description

template<int D> class waveblocks::io::hdf5writer< D >

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation

template<int D>
class waveblocks::io::hdf5writer< D >